Molecular Tweezers

Tweezer standing

A major project in our lab is the development of Molecular Tweezers as novel drug candidates for amyloidoses and related conditions. These compounds have been invented by Professors Frank-Gerrit Klärner and Thomas Schrader at the University of Duisburg-Essen, Germany, and applied to the prevention of abnormal protein aggregation by us. We are collaborating with over 30 laboratories at UCLA and around the world on these development efforts and leading a project called Breakthrough Treatment for Degenerative Diseases.

The early days of investigation focused on characterizing the effect of the molecular tweezers on the aggregation and toxicity of Aβ. Later, this investigation was expanded to other amyloidogenic proteins and concluded in a 2011 paper demonstrating the inhibitory effect of a lead molecular tweezer called CLR01 on 10 different proteins. In follow-up work, we compared CLR01 to two compounds predicted to have similar effects, which have gone on to clinical trials – the sugar derivative scyllo-inositol, and the green-tea compound EGCG. CLR01 was found to have similar activity to EGCG in vitro and in cell culture and both compounds performed better than scyllo-inositol in the tests we used (Sinha et al., 2012). Mass-spectrometry experiments by Joe Loo's group at UCLA, and NMR experiments by Chunyu Wang’s group at Rensselaer Polytechnic Institute showed that CLR01 bound to Aβ at the expected binding sites – the lysine and arginine residues, whereas no clear binding site was found for EGCG on Aβ, leaving the mechanism of action of EGCG unclear (for a detailed comparison of CLR01 and EGCG, see our 2013 review. For more general reviews about the molecular tweezers activity see Attar and Bitan 2014 and Schrader et al., 2016).

The main binding site of CLR01 is lysine residues, and the binding of CLR01 to lysines is predicted to disrupt molecular interactions that are important for the abnormal self-assembly of different proteins that leads to the formation of toxic oligomers and aggregates. To test the importance of lysine residues in Aβ, we studied Aβ derivatives in which each of the two lysines was substituted by an alanine (a small amino acid that cannot form the same types of molecular interactions as the larger lysine). We found not only that both the lysines were important mediators of the aggregation of Aβ, but also that one of them, in particular, was crucial for Aβ toxicity. When this particular lysine – at position 16 in the Aβ amino acid sequence – was replaced by alanine, the toxicity almost completely disappeared!

Alzheimer's-disease-related studies: Although in advanced Alzheimer’s disease the brain suffers massive atrophy, the earliest stages of the disease are characterized by loss of synapses. At that stage, neurons are still alive, but they fail to communicate. This manifests as loss of tiny protrusions on the nerve cells, called dendritic spines, and decline in the electrophysiologic activity of the affected neurons. Using fluorescence microscopy, we showed that Aβ oligomers caused a sharp decline in the number of dendritic spines on neurons and that this toxic effect of Aβ could be prevented by CLR01. In addition, experiments by Claudio Grassi’s group at the Catholic University in Rome, Italy, showed that CLR01 prevented the decline in electrical activity by the neurons (Attar et al., 2012).

We then studied the effect of CLR01 in a mouse model of Alzheimer’s disease in collaboration with the Frautschy group at UCLA and showed that following treatment with a very low dose of CLR01 – just 40 micrograms per kilogram a day, there was a marked reduction in the brain load of amyloid plaques and neurofibrillary tangles, the two hallmark pathological lesions in Alzheimer’s disease. The treatment also caused a significant reduction in brain inflammation, which is part of the disease process in Alzheimer’s. There were no side effects associated with the treatment (Attar et al., 2012).

In 2014, we tested the safety and pharmacology of CLR01 and found that the compound was safe in mice at doses 250-times higher than those that showed the therapeutic effect in the mouse model of Alzheimer’s disease. At that high dose, there were no behavioral or histological findings indicating toxicity. Blood analysis did not find any signs of toxicity. The only significant difference between the mice that received CLR01 and those that received placebo was approximately 40% reduction in blood cholesterol in the CLR01-treated mice. Additional in-vitro studies demonstrated that CLR01 suppressed the formation of specific Aβ oligomers associated with Alzheimer's disease (collaboration with the Bowers group, UC Santa Barabra) and protected membranes from disruption by Aβ42 (collaboration with the Jelinek group, Ben Gurion University, Beer Sheva, Israel).

More recently, we shifted our attention to tau, the protein that forms toxic neurofibrillary tangles in the brain of people suffering from Alzheimer's disease. Tau aggregation also characterizes other diseases, such as frontotemporal dementia, progressive supranuclear palsy, and others (see amyloidoses), together called tauopathies. In collaboration with the Smet-Nocca group at the University of Lille 1, France, we found that CLR01 was an effective inhibitor of tau aggregation and cell-to-cell spreading of aggregated tau (Despres et al., 2019), a mechanism by which Alzheimer's disease and other tauopathies spread through the brain. Interestingly, although there are over 40 potential binding sites for CLR01 in tau, the main binding region was the microtubule-binding domain, which is the most aggregation-prone region in tau.

Parkinson's-disease and other synucleinopathies: The first demonstration of the therapeutic effect of CLR01 in a living organism was in a collaborative study with Jeff Bronstein’s group at UCLA using zebrafish embryos genetically engineered to express the human protein α-synuclein, which aggregates and kills dopamine-producing cells in the brain of people who have Parkinson’s disease. Our in vitro characterization of the interaction between CLR01 and α-synuclein showed that CLR01 not only prevented aggregation of α-synuclein but also dissociated pre-formed aggregates (Prabhudesai et al., 2012). The mechanism by which CLR01 inhibited α-synuclein in vitro was explored by the Lapidus group at Michigan State University who found that the molecular tweezer affected the rate of conformational remodeling of α-synuclein and shifted it outside the aggregation range (Acharya et al., 2014). In another zebrafish study by the Bronstein group, CLR01 was found also to protect zebrafish from the neurotoxicity of the pesticide Ziram (Lulla et al. 2016), demonstrating that it could be effective also against environmentally induced Parkinson's disease. Later, in collaboration with the Chesselet group at UCLA, CLR01 also was shown to ameliorate motor deficits and reduce the accumulation of soluble α-synuclein in the striatum, in a mouse model of Parkinson's disease expressing human α-synuclein in the brain (Richter et al., 2017).

Interestingly, synuclein accumulation has been found in a lamprey model of spinal-cord injury leading us to ask whether CLR01 could ameliorate neuronal death following spinal-cord injury in these animals. In collaboration with the Morgan group at Marine Biological Laboratories, we found that the compound effectively reduced synuclein aggregation in the lampreys and protected the affected neurons from degeneration (Fogerson et al., 2016).

Other diseases:

TTR amyloidosis: The therapeutic effect of CLR01 was further demonstrated in a collaborative study with the Almeida group at the University of Porto, Portugal, who used a mouse model of Familial Amyloidotic Polyneuropathy (FAP), a genetic disease caused by mutations in the gene encoding the carrier protein transthyretin (TTR). Treatment with CLR01 led to a significant reduction in TTR deposition in the affected tissues, with a concomitant decrease in disease markers, including apoptosis (programmed cell death), cellular stress, and protein oxidation.

Desmin-related cardiomyopathy: The Robbins group at Cincinnati Children’s Hospital used CLR01 in cell-culture and mouse models of desmin-related cardiomyopathy, a rare proteinopathy that can be caused by mutations in several proteins. In their model, the disease phenotype was caused by a mutation in the protein αB-crystalline that causes its aggregation into cytotoxic oligomers and aggregates that kill heart muscle cells. CLR01 treatment led to a significant reduction in the aggregation of the mutant protein and its toxicity (Xu et al., 2017), suggesting that it could be an effective therapeutic agent for this type of heart disease.

Type-2 diabetes: CLR01 prevented aggregation of islet amyloid polypeptide (IAPP), which is associated with degeneration of pancreatic β-cells in type-2 diabetes, at very low concentrations.

Cancer: CLR01 prevented the formation of toxic aggregates of the protein p53, which are associated with certain types of cancer (collaboration with the Segal group, Tel Aviv University, Israel).

Huntington's disease: CLR01 inhibited the aggregation of huntingtin exon 1 containing an expanded polyglutamine repeat both in the test tube and in living cells (collaboration with the Ebbinghaus group at Ruhr-University, Bochum, Germany, and Sanchez-Garcia group, University of Duisburg-Essen, Germany.

Amyotrophic lateral sclerosis: CLR01 was found to inhibit the aggregation of several disease-causing variants of superoxide dismutase 1 (SOD1). The molecular tweezer also reduced significantly the accumulation of misfolded SOD1 in the G93A-SOD1 mouse model of ALS (collaboration with Martina Wiedau, UCLA).

Anti-viral activity: In a different direction, CLR01 was found by the Münch group (Ulm University, Germany) and Shorter group (University of Pennsylvania) to disrupt the formation of amyloid fibrils in semen, which are known to enhance HIV infection, and reduced infection of target cells by the HIV virus. Surprisingly, CLR01 also attacked the virus itself by destroying its envelope. The study showed that CLR01 was also effective at directly disrupting other enveloped viruses, including hepatitis C virus, human cytomegalovirus, and herpes simplex virus. These results suggested that CLR01 may also be effective against many other enveloped viruses including flu and Ebola. Indeed, a follow-up investigation demonstrated the inhibitory activity of CLR01 against Ebola, Zika, and several other enveloped viruses.